DreEX0000172 @ danRer10
Exon Skipping
Gene
ENSDARG00000052118 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr7:50207692-50209814:-
Coord C1 exon
chr7:50209651-50209814
Coord A exon
chr7:50208558-50208759
Coord C2 exon
chr7:50207692-50207799
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTTGTATTGCATGACTGTAGGTC
3' ss Score
6.36
5' ss Seq
GGGGTAAAG
5' ss Score
3.53
Exon sequences
Seq C1 exon
CACTCCAGAATGGACACTCTCAGTTTGTTATCAATGGGAACTGGAAGATCAATGTTCCTGGAGAGTACAGTGTGGCGGGGACCAAACTGCAGTACCGCCGTTCCGCCGACACCTGGGAGAGCTTTGAGGTTTCAGGACCGACTCAGGAGGACCTGCACATCATG
Seq A exon
GTCCTGTCCACTGATAAGAAATCTGGGATAGAGTATGAGTACTGGCTTCCTCCAGACCGATATGCCCTGTATCATGGGAGAAGTCAGCTTCGACAGACTCACCACACAGCAAACCACTTGCCCTTTGAGCCTCCAACCACTAGGACCACCACTACCACAACCACCACTACAGCACAGCCAACCACTAGAGCTTTCTTCTGGG
Seq C2 exon
GTCCCGCTGCTCAATGGCCTTTTCAGCCCCCCTATCAGCAGCAGCCGGTCCCACGTTTGGAAAGAGATGAAAACCGCAGGAATCGACTGCCTGAAATACATCGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052118-'10-12,'10-10,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.515 C2=0.649
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.1=100)
A:
PF059869=ADAM_spacer1=PD(14.5=23.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCAGAATGGACACTCTCA
R:
ACGATGTATTTCAGGCAGTCGA
Band lengths:
268-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]