GgaEX6028032 @ galGal4
Exon Skipping
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3129212-3129883:-
Coord C1 exon
chr28:3129740-3129883
Coord A exon
chr28:3129475-3129657
Coord C2 exon
chr28:3129212-3129283
Length
183 bp
Sequences
Splice sites
3' ss Seq
AGCCGCAGCGATCCCCTTAGCTC
3' ss Score
-0.73
5' ss Seq
CCAGGGCCC
5' ss Score
-14.43
Exon sequences
Seq C1 exon
CCCTGATGAGGAGCGACGGACGCTACGTGCTCAATGGGGACTGGTCCATCGCCTGGCCGGGGCCCTACGAGGTGGCCGGCACACAGCTGCTCTACGCCCGCAGCCCTGACGGCACCGAGAGCCTGGAGGCACCGGGACCCACAG
Seq A exon
CTCTGCCCCTGGATGCACAGGTGCTGCTGCAGGAGCCCAACCCAGGCATTGAGTACGAGTTCTGGCTGCCCCGCGGGCACCCCCAGCACAGCATGGTGGACACCAGCGCCCTGCGGCAGCCCCAACCCCGTGGAGCTGGCAGCCCCCCGCCCGCTGAGCCCCCACTCCCCACGGTGCCCCCCA
Seq C2 exon
GGCGATGCGGGCGGTGCCACCCACCCAAGGGGCGCTCTCAGCGCATCCGGCACTTCTGCCAGAGTGACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298-'10-14,'10-12,12-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.613 C2=0.360
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(43.2=100)
A:
PF059869=ADAM_spacer1=PD(20.7=37.1)
C2:
PF0175916=NTR=PU(7.7=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGAGGAGCGACGGA
R:
CGAAGTCACTCTGGCAGAAGT
Band lengths:
215-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]