MmuEX6052342 @ mm10
Exon Skipping
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128942808-128943641:+
Coord C1 exon
chr10:128942808-128943015
Coord A exon
chr10:128943118-128943311
Coord C2 exon
chr10:128943553-128943641
Length
194 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCCTTCCTCCACAGCTG
3' ss Score
12.14
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTTTCTCCATCGATTCTGGGAAGGGTCTTATGCGCTCAGAAGAGCTGAGTTTTGTGGCAGGGGCCCCACGTGCCAACCACAAAGGGGCTGTGGTCATTCTGCGCAAGGATAGCGCCAGCCGCTTGATACCTGAGGTTGTGCTGTCTGGGGAGCGCCTGACCTCTGGCTTTGGCTACTCACTGGCTGTGACTGATCTCAACAATGATGG
Seq A exon
CTGGGCAGACCTGATTGTGGGTGCCCCCTACTTCTTTGAACGCCAAGAAGAGCTGGGAGGTGCTGTGTATGTGTACATGAACCAGGGTGGCCATTGGGCAGATATCTCTCCTCTCCGAATCTGTGGCTCCCCTGATTCCATGTTTGGGATCAGTTTGGCTGTATTGGGGGACCTCAACCAAGATGGCTTCCCAG
Seq C2 exon
ACATTGCCGTGGGAGCTCCCTTTGACGGAGATGGGAAGGTCTTTATCTACCATGGGAGCAGCCTTGGGGTGGTTGTCAAACCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348-'16-15,'16-13,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PU(6.8=7.1)
A:
PF135171=VCBS=FE(87.8=100)
C2:
PF135171=VCBS=PD(4.1=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGGTCTTATGCGCTCAG
R:
AAGGCTGCTCCCATGGTAGAT
Band lengths:
255-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types