GgaEX6042309 @ galGal3
Exon Skipping
Gene
ENSGALG00000009362 | ITA6_CHICK
Description
NA
Coordinates
chr7:19106279-19107356:-
Coord C1 exon
chr7:19107146-19107356
Coord A exon
chr7:19106503-19106696
Coord C2 exon
chr7:19106279-19106370
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCCCTTCTTTAAGATG
3' ss Score
9.65
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTTCTCTTTGGATTCTGGTAAAGGAATTGTCTCCCAAGATGAGATGACTTTTGTGTCTGGTGCACCAAGGGCCAACCATAGTGGAGCAGTTGTTTTACTGAAAAAGGAGAAAAATCAGAGAGCGCTTTCACTGGAGCACATGTTCGAAGGAGAAGGGCTGGCCTCTTCTTTTGGTTATGATGTGGCCGTTGTGGATCTGAACAGTGATGG
Seq A exon
ATGGCAAGATATTGTGGTTGGAGCCCCGCAATACTTTGATAGAAGTGGAGATATCGGTGGTGCTGTGTACATCTACATTAACCAGCGAGGCAAATGGGAAGGAATAAAACCTATTCGCTTAAATGGGACCGCTGACTCGATGTTTGGTCTCGCAGTTGAAAATGTTGGGGACATTAATCAGGACGGATATCCAG
Seq C2 exon
CAGATATTGCAGTAGGGGCTCCATATGATGGTTTTGGCAAAGTATATATATATCATGGATCCAAGAATGGAATAAATACAGAACCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'7-13,'7-12,8-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF135171=VCBS=PU(6.7=7.0)
A:
PF135171=VCBS=FE(86.7=100)
C2:
PF135171=VCBS=PD(5.3=12.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGTCTGGTGCACCAAGG
R:
TGTGCTGGTTCTGTATTTATTCCA
Band lengths:
252-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]