GgaEX6042309 @ galGal4
Exon Skipping
Gene
ENSGALG00000009362 | ITGA6
Description
integrin alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990620]
Coordinates
chr7:17228088-17229165:-
Coord C1 exon
chr7:17228955-17229165
Coord A exon
chr7:17228312-17228505
Coord C2 exon
chr7:17228088-17228176
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCCCTTCTTTAAGATG
3' ss Score
9.65
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTTCTCTTTGGATTCTGGTAAAGGAATTGTCTCCCAAGATGAGATGACTTTTGTGTCTGGTGCACCAAGGGCCAACCATAGTGGAGCAGTTGTTTTACTGAAAAAGGAGAAAAATCAGAGAGCGCTTTCACTGGAGCACATGTTCGAAGGAGAAGGGCTGGCCTCTTCTTTTGGTTATGATGTGGCCGTTGTGGATCTGAACAGTGATGG
Seq A exon
ATGGCAAGATATTGTGGTTGGAGCCCCGCAATACTTTGATAGAAGTGGAGATATCGGTGGTGCTGTGTACATCTACATTAACCAGCAAGGCAAATGGGAAGGAATAAAACCTATTCGCTTAAATGGGACCGCTGACTCAATGTTTGGTCTCGCAGTTGAAAATGTTGGGGACATTAATCAGGACGGATATCCAG
Seq C2 exon
ATATTGCAGTAGGGGCTCCATATGATGGTTTTGGCAAAGTATATATATATCATGGATCCAAGAATGGAATAAATACAGAACCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF135171=VCBS=PU(6.8=7.0)
A:
PF135171=VCBS=FE(87.8=100)
C2:
PF135171=VCBS=PD(4.1=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGTCTGGTGCACCAAGG
R:
TGTGCTGGTTCTGTATTTATTCCA
Band lengths:
249-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]