BtaEX6009025 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24166981-24168317:-
Coord C1 exon
chr2:24168107-24168317
Coord A exon
chr2:24167212-24167405
Coord C2 exon
chr2:24166981-24167069
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCATTATGTTTTCAGGTG
3' ss Score
10.57
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GCTTTTCTTTGGACTCGGGGAAAGGTATTGTTTCCAAAGATGAGATCACTTTCGTGTCTGGTGCTCCTAGAGCCAATCATAGTGGAGCGGTGGTTTTGCTTAAAAGAGACCTGAAGTCTGCGCACCTTCTCCCTGAGCACATATTTGATGGGGAAGGGCTGGCTTCTTCATTTGGCTATGACGTAGCAGTGGTGGACCTCAACAAAGACGG
Seq A exon
GTGGCAAGATATAGTTATTGGAGCCCCACAGTATTTTGATAGAAGTGGAGAAGTTGGAGGTGCAGCGTATGTCTACATTAACCAGCAAGGCAGATGGAATAACGTCAAGCCGATTCGTCTTAATGGAACCAAAGATTCTATGTTTGGCATTGCAGTCAAAAATATTGGTGATATTAATCAAGATGGCTACCCAG
Seq C2 exon
ATATTGCGGTTGGAGCACCCTATGATGGTAAGGGGAAGGTTTTTATCTATCATGGATCTGCGAATGGAATAAATACCAAACCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.033
Domain overlap (PFAM):
C1:
PF135171=VCBS=PU(6.8=7.0)
A:
PF135171=VCBS=FE(87.8=100)
C2:
PF135171=VCBS=PD(4.1=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGGACTCGGGGAAAGGT
R:
TCCCCTTACCATCATAGGGTGC
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]