RnoEX6017404 @ rn6
Exon Skipping
Gene
ENSRNOG00000001518 | Itga6
Description
integrin subunit alpha 6 [Source:RGD Symbol;Acc:621633]
Coordinates
chr3:58485363-58486750:+
Coord C1 exon
chr3:58485363-58485573
Coord A exon
chr3:58486332-58486525
Coord C2 exon
chr3:58486662-58486750
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTTGCTGTGTTTTAGGTG
3' ss Score
13.1
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GCTTTTCTCTGGACTCAGGGAAGGGTATTGTTTCTAAAGATGACATCACTTTTGTATCTGGTGCTCCAAGAGCCAATCACAGTGGGGCTGTAGTTTTGCTAAAAAGAGACATGAAGTCAGCACATCTTCTCCTTGAGTATATATTTGATGGTGAAGGCCTGGCTTCTTCGTTTGGCTATGACGTGGCGGTGGTGGACCTCAATGCAGATGG
Seq A exon
GTGGCAAGACATCGTTATCGGAGCGCCACAGTACTTTGACAGGGATGGCGAAGTCGGGGGTGCGGTGTACGTCTACATTAACCAGCAAGGCAGATGGAGTAATGTGAAGCCAGTTCGTCTAAATGGGACCAAAGACTCGATGTTTGGAATCGCAGTGAAAAATATCGGCGATATTAATCAAGATGGCTATCCGG
Seq C2 exon
ATATTGCTGTTGGAGCTCCCTATGACGATCTGGGGAAGGTTTTTATCTATCATGGATCCCCGACTGGCATAATTACCAAGCCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001518-'14-8,'14-7,16-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PU(6.8=7.0)
A:
PF135171=VCBS=FE(87.8=100)
C2:
PF135171=VCBS=PD(4.1=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGGACTCAGGGAAGGGT
R:
TCCCCAGATCGTCATAGGGAG
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]