DreEX6032002 @ danRer10
Exon Skipping
Gene
ENSDARG00000069946 | itga6b
Description
integrin, alpha 6b [Source:ZFIN;Acc:ZDB-GENE-050320-5]
Coordinates
chr1:30237382-30238534:+
Coord C1 exon
chr1:30237382-30237595
Coord A exon
chr1:30238119-30238312
Coord C2 exon
chr1:30238446-30238534
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGAACTGATTCTTAAAACAGGTG
3' ss Score
6.67
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTTCTCTTTGGATTCTGGAAAAATGCTGACTAAGAGAGGTCAGTTGACCATAGTTGCTGGGGCTCCAAGAGCCAATCACAGTGGGGCAGTTGTGCTTTTAAAGAAGGATGAGGCTAAATCCTCCTTGTTGACGGCTGAGTACACCCTAGAGGGTAGTGGACTTGCCTCTTCCTTTGGTTATGACCTTGCAGTGCTTGACATCAATGGAGATGG
Seq A exon
GTGGCAAGACATTGTAGTTGGAGCACCTCAGTACTTCATTAAAGATGGTGATATTGGTGGAGCAATCTATGTTTACCTTAACGAGGAAGGAGCTTGGGACAAGATTACTCCAAAGAGAATTGATGGACCTGCTTATTCCATGTTTGGTTTGGCTGTGGAAAACATGGGAGATGTGAATCTGGATGGATATCAAG
Seq C2 exon
ATGTTGCTGTTAGCGCCCCATATGACAGCAATGGAGCTGGAAACGTGATTATCTTCCACGGTTCACCACAAGGACTGAAAAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069946-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF135171=VCBS=PU(25.0=31.9)
A:
PF135171=VCBS=FE(70.7=100)
C2:
PF135171=VCBS=PD(3.3=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGTTGCTGGGGCTCCAAG
R:
CAGTCCTTGTGGTGAACCGTG
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]