BtaEX0018503 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012897 | ITGA7
Description
integrin, alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr5:57882236-57882737:+
Coord C1 exon
chr5:57882236-57882276
Coord A exon
chr5:57882364-57882429
Coord C2 exon
chr5:57882530-57882737
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCTCGTTCATGTACACATACACG
3' ss Score
-3.94
5' ss Seq
CAGCTATGG
5' ss Score
1.71
Exon sequences
Seq C1 exon
CTGGGAAGCCATCTTGATTGAGATCCCCCAGGACTGCCAGG
Seq A exon
ACGGCACCCCCCAGTTCTTCTTGACGCTCGAAGAAGTAGGGGGCACCCACTACCAGGTCTGTCCAG
Seq C2 exon
CCATCATTGTTGAGATCAGCCACGGCCAGCGAGTAGCCAAAGCCGGAGGTCAGGCGCTCCCCGGACAGCGTCACTTCAGGCACCAGGCGACTGGCACTGTCTTTGCGTAGAATGACCACGGCACCCTTGTGGTTGGCACGGGGGGCCCCTGCCACAAAGCTCAGCTCCTCAGCTCGAACCAGTCCCTTCCCCGAGTCGATGGAGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012897_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGCCATCTTGATTGAGA
R:
AAGGGTGCCGTGGTCATTCTA
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development