BtaEX0018502 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012897 | ITGA7
Description
integrin, alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr5:57881774-57882737:+
Coord C1 exon
chr5:57881774-57881862
Coord A exon
chr5:57882236-57882276
Coord C2 exon
chr5:57882530-57882737
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTCCCATTCCCAGTCACACCTG
3' ss Score
-7.01
5' ss Seq
AGGCTGATC
5' ss Score
-7.37
Exon sequences
Seq C1 exon
CTGAGAAGGCTTGGTGACAACCCCCAGACTGCTCCCATGGTAGATAAAGACCTTCCCGTCCCCATCGAAGGGAGCCCCCACAGCAAGGT
Seq A exon
CTGGGAAGCCATCTTGATTGAGATCCCCCAGGACTGCCAGG
Seq C2 exon
CCATCATTGTTGAGATCAGCCACGGCCAGCGAGTAGCCAAAGCCGGAGGTCAGGCGCTCCCCGGACAGCGTCACTTCAGGCACCAGGCGACTGGCACTGTCTTTGCGTAGAATGACCACGGCACCCTTGTGGTTGGCACGGGGGGCCCCTGCCACAAAGCTCAGCTCCTCAGCTCGAACCAGTCCCTTCCCCGAGTCGATGGAGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012897_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACTGCTCCCATGGTAGA
R:
GCCTGAAGTGACGCTGTCC
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development