RnoEX6030304 @ rn6
Exon Skipping
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3364519-3365363:+
Coord C1 exon
chr7:3364519-3364726
Coord A exon
chr7:3364824-3365017
Coord C2 exon
chr7:3365275-3365363
Length
194 bp
Sequences
Splice sites
3' ss Seq
CACTGTTTCTTCTTCCGCAGCTG
3' ss Score
10.33
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTTCTCCATTGATTCTGGGAAGGGTCTCATGCGCTCAGAAGAGCTGAGTTTTGTGGCAGGGGCCCCACGTGCCAACCACAAAGGGGCTGTGGTCATTCTGCGCAAGGATAGTGCCAGCCGCCTGATTCCTGAGGTTGTGCTGTCTGGGGAGCGCCTGACCTCTGGCTTTGGCTACTCCCTGGCTGTGACTGACCTCAACAGTGATGG
Seq A exon
CTGGGCAGACCTGATTGTGGGTGCTCCCTACTTCTTTGAACGCCAAGAAGAACTTGGAGGTGCCGTGTATGTGTACATGAACCAGGGTGGCCATTGGGCAGATATCTCTCCTCTCCGACTCTGTGGCTCCCCTGACTCCATGTTTGGGATCAGTTTGGCTGTACTGGGGGACCTCAATCAAGATGGCTTTCCAG
Seq C2 exon
ACATTGCTGTAGGAGCTCCCTTTGACGGAGATGGGAAAGTCTTTATCTACCATGGGAGCAGCCTGGGGGTGGTCACCAAACCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PU(6.8=7.1)
A:
PF135171=VCBS=FE(87.8=100)
C2:
PF135171=VCBS=PD(4.1=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCATGCGCTCAGAAGAG
R:
CAGGCTGCTCCCATGGTAGAT
Band lengths:
250-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]