MmuEX6053501 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47786481-47808599:-
Coord C1 exon
chr15:47808412-47808599
Coord A exon
chr15:47801544-47801732
Coord C2 exon
chr15:47786481-47786597
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCCTTTGTTTCTCAGGTG
3' ss Score
10.92
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
ATTTCAGACTGAACTAAATTATGATGTTCTGGAAGTTCATGATGGACCAAATCTTCTATCACCCTTACTTGGGTCTTACAATGGCACACAAGTGCCACAGTTTCTGTTCAGCAGCAGTAACTTTATATACCTACTGTTTACAACAGACAATAGCCGTTCCAATAATGGATTCAAGATTCATTATGAAA
Seq A exon
GTGTTACAGTGAACACATACTCTTGCTTGGACCCTGGCATCCCTGTCCATGGCCGTCGATATGGTCACGATTTCTCTATTGGGTCAACTGTTTCATTTAGTTGTGATCCAGGATACCGACTGAGCCATGAAGAGCCCCTTCTTTGTGAAAAAAACCATTGGTGGAGTCATCCACTCCCAACCTGTGATG
Seq C2 exon
CACTATGTGGCGGGGATGTGAGAGGACCTAGCGGGACAATCTTGTCTCCTGGTTACCCAGAATTTTATCCAAACTCTCTGAATTGTACATGGACAGTTGATGTCACCCATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'30-22,'30-20,31-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.5=95.3)
A:
PF0008415=Sushi=WD(100=84.4)
C2:
PF0043115=CUB=PU(34.3=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTACTTGGGTCTTACAATGGC
R:
TTTCCATGGGTGACATCAACTGT
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: