GgaEX6022106 @ galGal4
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:132999829-133012795:-
Coord C1 exon
chr2:133012608-133012795
Coord A exon
chr2:133009885-133010073
Coord C2 exon
chr2:132999829-132999945
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTTGAATATAGGTG
3' ss Score
8.8
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ATTTCAGACAGAACTTAATTATGATGTTTTGGAAGTTCATGATGGACCAAGTTTATTATCTCCACTTCTGGGATCTTACAATGGTACTCAGGTCCCACAATTCCTCTTTAGCAGTAGCAATTTCATTTATCTTCTCTTCACAACTGACAACAGTCGTTCTAACAATGGATTCAAGATTCACTATGAAA
Seq A exon
GTGTAACTGTTAATACTTACTCTTGTTTGGATCCTGGCATACCAGTGCATGGACGCCGCTATGGACATGACTTCTCAATAGGCTCCACTGTCTCATTTAGTTGTGATCCAGGTTATAGGCTGAGTCATGAGGAGCCTTTACTATGTGAAAAAAATCACTGGTGGAGTCACCCACTCCCAACTTGTGATG
Seq C2 exon
CCTTATGTGGTGGAGATGTTAGAGGACCTAGTGGGACAATTTTATCCCCTGGTTATCCAGAACTTTATCCAAATTCACTGAATTGTACATGGACTGTGGATGTTACCCATGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.5=95.3)
A:
PF0008415=Sushi=WD(100=84.4)
C2:
PF0043115=CUB=PU(34.3=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCACTTCTGGGATCTTACA
R:
CCATGGGTAACATCCACAGTCC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]