GgaEX6022106 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139174891-139187857:-
Coord C1 exon
chr2:139187670-139187857
Coord A exon
chr2:139184947-139185135
Coord C2 exon
chr2:139174891-139175007
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTTGAATATAGGTG
3' ss Score
8.8
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ATTTCAGACAGAACTTAATTATGATGTTTTGGAAGTTCATGATGGACCAAGTTTATTATCTCCACTTCTGGGATCTTACAATGGTACTCAGGTCCCACAATTCCTCTTTAGCAGTAGCAATTTCATTTATCTTCTCTTCACAACTGACAACAGTCGTTCTAACAATGGATTCAAGATTCACTATGAAA
Seq A exon
GTGTAACTGTTAATACTTACTCTTGTTTGGATCCTGGCATACCAGTGCATGGACGCCGCTATGGACATGACTTCTCAATAGGCTCCACTGTCTCATTTAGTTGTGATCCAGGTTATAGGCTGAGTCATGAGGAGCCTTTACTATGTGAAAAAAATCACTGGTGGAGTCACCCACTCCCAACTTGTGATG
Seq C2 exon
CCTTATGTGGTGGAGATGTTAGAGGACCTAGTGGGACAATTTTATCCCCTGGTTATCCAGAACTTTATCCAAATTCACTGAATTGTACATGGACTGTGGATGTTACCCATGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.5=95.3)
A:
PF0008415=Sushi=WD(100=84.4)
C2:
PF0043115=CUB=PU(34.3=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCACTTCTGGGATCTTACA
R:
CCATGGGTAACATCCACAGTCC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]