MmuEX6053501 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47954935-47977053:-
Coord C1 exon
chr15:47976866-47977053
Coord A exon
chr15:47969998-47970186
Coord C2 exon
chr15:47954935-47955051
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCCTTTGTTTCTCAGGTG
3' ss Score
10.92
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
ATTTCAGACTGAACTAAATTATGATGTTCTGGAAGTTCATGATGGACCAAATCTTCTATCACCCTTACTTGGGTCTTACAATGGCACACAAGTGCCACAGTTTCTGTTCAGCAGCAGTAACTTTATATACCTACTGTTTACAACAGACAATAGCCGTTCCAATAATGGATTCAAGATTCATTATGAAA
Seq A exon
GTGTTACAGTGAACACATACTCTTGCTTGGACCCTGGCATCCCTGTCCATGGCCGTCGATATGGTCACGATTTCTCTATTGGGTCAACTGTTTCATTTAGTTGTGATCCAGGATACCGACTGAGCCATGAAGAGCCCCTTCTTTGTGAAAAAAACCATTGGTGGAGTCATCCACTCCCAACCTGTGATG
Seq C2 exon
CACTATGTGGCGGGGATGTGAGAGGACCTAGCGGGACAATCTTGTCTCCTGGTTACCCAGAATTTTATCCAAACTCTCTGAATTGTACATGGACAGTTGATGTCACCCATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'59-31,'59-29,60-31=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.5=95.3)
A:
PF0008415=Sushi=WD(100=84.4)
C2:
PF0043115=CUB=PU(34.3=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTAAACTCACCTGGTCC
R:
GTAGTCCCAGGCCCTTCTCTC
Band lengths:
243-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types