MmuEX6053502 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47781467-47801732:-
Coord C1 exon
chr15:47801544-47801732
Coord A exon
chr15:47786481-47786597
Coord C2 exon
chr15:47781467-47781682
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCATTGTCTTTTCAGCAC
3' ss Score
9.76
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTGTTACAGTGAACACATACTCTTGCTTGGACCCTGGCATCCCTGTCCATGGCCGTCGATATGGTCACGATTTCTCTATTGGGTCAACTGTTTCATTTAGTTGTGATCCAGGATACCGACTGAGCCATGAAGAGCCCCTTCTTTGTGAAAAAAACCATTGGTGGAGTCATCCACTCCCAACCTGTGATG
Seq A exon
CACTATGTGGCGGGGATGTGAGAGGACCTAGCGGGACAATCTTGTCTCCTGGTTACCCAGAATTTTATCCAAACTCTCTGAATTGTACATGGACAGTTGATGTCACCCATGGAAAAG
Seq C2 exon
GTGTGCAGTTCAACTTCCACACTTTTCATTTAGAAGACCATCATGACTATTTGCTGATCACAGAGAACGGTAGTTTTACCCAACCACTGGCACGACTCACTGGTTCGGAACTTCCCTCGACAATCAATGCTGGCCTTTATGGAAACTTCAGGGCTCAATTGCGCTTTATTTCTGACTTTTCAATATCATATGAAGGATTTAACATCACATTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'31-23,'31-22,33-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.4)
A:
PF0043115=CUB=PU(34.3=92.5)
C2:
PF0043115=CUB=PD(64.8=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCATGGCCGTCGATATG
R:
GTTCCGAACCAGTGAGTCGTG
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: