HsaEX6081980 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113650925-113662578:-
Coord C1 exon
chr8:113662390-113662578
Coord A exon
chr8:113657338-113657454
Coord C2 exon
chr8:113650925-113651140
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTTTGTATTTCAGCAT
3' ss Score
9.61
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGTTACAGTGAACACGTATTCTTGTTTGGACCCTGGCATACCTGTACATGGCCGTCGCTATGGTCATGATTTCTCCATTGGCTCTACTGTTTCATTTAGTTGTGATTCAGGATACAGGTTGAGTCATGAAGAGCCCCTTCTATGCGAAAAAAACCACTGGTGGAGTCATCCACTTCCAACCTGTGATG
Seq A exon
CATTATGTGGAGGAGATGTTAGAGGGCCTAGTGGAACAATCTTATCACCTGGTTACCCGGAATTTTATCCAAATTCTCTGAATTGTACATGGACTGTTGATGTAACCCATGGAAAAG
Seq C2 exon
GTGTGCAGTTCAACTTCCACACTTTTCATTTGGAAGACCATCATGACTACTTACTGATCACAGAGAATGGCAGTTTTACCCAACCACTGGCACGCCTGACTGGTTCAGATCTTCCTCCAACAATCAATGCTGGTCTCTATGGAAATTTCAGGGCTCAATTGCGTTTCATTTCAGATTTTTCAATATCATATGAAGGATTTAACATAACATTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.4)
A:
PF0043115=CUB=PU(34.3=92.5)
C2:
PF0043115=CUB=PD(64.8=95.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGACCCTGGCATACCTG
R:
AGTGGTTGGGTAAAACTGCCA
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)