RnoEX6032183 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:87119595-87132539:-
Coord C1 exon
chr7:87132351-87132539
Coord A exon
chr7:87123891-87124007
Coord C2 exon
chr7:87119595-87119810
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTGTCTTTTTCAGCAT
3' ss Score
11.88
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGTTACAGTGAACACATACTCTTGTCTAGACCCTGGCATCCCTGTCCATGGCCGTCGATATGGCCACGACTTCTCCATTGGCTCAACTGTTTCATTTAGTTGTGATCCAGGATACCGACTAAGCCATGAAGAGCCCCTTCTTTGTGAGAAAAACCATTGGTGGAGTCATCCACTCCCTACCTGTGATG
Seq A exon
CATTATGTGGCGGGGATGTGAGAGGACCTAGTGGGACAATCTTATCACCTGGTTACCCAGAATTTTATCCAAATTCTCTGAATTGTACATGGACAGTTGATGTAACCCATGGGAAAG
Seq C2 exon
GTGTGCAGTTCAACTTCCACACGTTTCACTTAGAAGACCATCATGACTATTTATTGATCACAGAGAATGGTAGTTTTACCCAACCACTGGCACGCCTCACTGGTTCAGAACTTCCTTCAACCATCAATGCTGGCCTTTATGGAAACTTCAGGGCTCAGTTGCGCTTCATTTCTGACTTTTCGATATCATATGAAGGATTTAACATCACATTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'19-26,'19-24,20-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAGCCATGAAGAGCCCCT
R:
GAAATGAAGCGCAACTGAGCC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]