DreEX6042851 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47952200-47969635:-
Coord C1 exon
chr16:47969447-47969635
Coord A exon
chr16:47957551-47957667
Coord C2 exon
chr16:47952200-47952415
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCACACGTGTCTTCCTGCAGCTC
3' ss Score
9.46
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGTCACTCTGGACACTCACTCATGTTTGGACCCTGGCGTGCCAGTAAATGGGGTCCGTTACGGGCAGGACTTGGCCATCGGTTCTGTGGTGTGGTTTGGCTGTGAGCCCGGATACAGACTGAGCCACGAGGAGCAGTTGGTCTGTGAAAAGAACCACTGGTGGAGCCACCCTCTGCCTACATGTGACG
Seq A exon
CTCTGTGCGGAGGCGATGTGCGCGGCCCAGAGGGCATCATACTCTCTCCCGGCTTCCCTGAGCTCTATCCCAACTCATTAAACTGCACATGGACTCTGGAGGTCAGCCATGGCAAAG
Seq C2 exon
GTGTGCAGTTCACGTTTCATGCGTTTCACCTGGAGGATCACCATGACTATCTGCTGCTGACGGAGAACGGCAGTTTCGTGCGGCCTCTTGCTCGGCTCACCGGTTCGCAACGACCCCCGCCAGTCAATGCCGGACTGTACGGAAACTTCAAAGCCCAGCTCCGCTTCATCTCAGACTTCTCCATCTCCTTCCAGGGCTTCAACATCTCGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'19-20,'19-19,20-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.4)
A:
PF0043115=CUB=PU(34.3=92.5)
C2:
PF0043115=CUB=PD(64.8=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTTCTGTGGTGTGGTTTG
R:
GTTTCCGTACAGTCCGGCATT
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]