DreEX0067825 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47946949-47957667:-
Coord C1 exon
chr16:47957551-47957667
Coord A exon
chr16:47952200-47952415
Coord C2 exon
chr16:47946949-47947049
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATAGCTGCTCTTCTGTTCAGGTG
3' ss Score
7.89
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CTCTGTGCGGAGGCGATGTGCGCGGCCCAGAGGGCATCATACTCTCTCCCGGCTTCCCTGAGCTCTATCCCAACTCATTAAACTGCACATGGACTCTGGAGGTCAGCCATGGCAAAG
Seq A exon
GTGTGCAGTTCACGTTTCATGCGTTTCACCTGGAGGATCACCATGACTATCTGCTGCTGACGGAGAACGGCAGTTTCGTGCGGCCTCTTGCTCGGCTCACCGGTTCGCAACGACCCCCGCCAGTCAATGCCGGACTGTACGGAAACTTCAAAGCCCAGCTCCGCTTCATCTCAGACTTCTCCATCTCCTTCCAGGGCTTCAACATCTCGTTCTCAG
Seq C2 exon
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCATGCGTACGTACATATGTGCGTGCGGGCGTGTGTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'20-21,'20-20,21-21
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=NA
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.3=92.5)
A:
PF0043115=CUB=PD(64.8=95.9)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCGGAGGCGATGTG
R:
CCGCACGCACATATGTACGTA
Band lengths:
204-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]