HsaEX6081981 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112636817-112645225:-
Coord C1 exon
chr8:112645109-112645225
Coord A exon
chr8:112638696-112638911
Coord C2 exon
chr8:112636817-112637005
Length
216 bp
Sequences
Splice sites
3' ss Seq
GTTTCTATTTTTCTTAATAGGTG
3' ss Score
10.32
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CATTATGTGGAGGAGATGTTAGAGGGCCTAGTGGAACAATCTTATCACCTGGTTACCCGGAATTTTATCCAAATTCTCTGAATTGTACATGGACTGTTGATGTAACCCATGGAAAAG
Seq A exon
GTGTGCAGTTCAACTTCCACACTTTTCATTTGGAAGACCATCATGACTACTTACTGATCACAGAGAATGGCAGTTTTACCCAACCACTGGCACGCCTGACTGGTTCAGATCTTCCTCCAACAATCAATGCTGGTCTCTATGGAAATTTCAGGGCTCAATTGCGTTTCATTTCAGATTTTTCAATATCATATGAAGGATTTAACATAACATTCTCTG
Seq C2 exon
AATATAACCTTGAACCTTGTGAAGATCCTGGCATTCCTCAATATGGTAGTCGAATCGGGTTCAACTTTGGGATTGGTGACACTCTGACCTTCTCATGCTCTTCGGGTTATCGACTGGAAGGAACATCAGAGATCATCTGTCTTGGTGGTGGCCGACGAGTGTGGAGTGCACCTCTGCCAAGGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'41-49,'41-48,43-49
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.3=92.5)
A:
PF0043115=CUB=PD(64.8=95.9)
C2:
PF0008415=Sushi=WD(100=87.5)
Main Skipping Isoform:
ENST00000343508fB13131
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGATGTTAGAGGGCC
R:
CCACACACCTTGGCAGAGG
Band lengths:
299-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains