MmuEX6053503 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47779525-47786597:-
Coord C1 exon
chr15:47786481-47786597
Coord A exon
chr15:47781467-47781682
Coord C2 exon
chr15:47779525-47779713
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCCCTATTTCTTATTCATAGGTG
3' ss Score
9.61
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CACTATGTGGCGGGGATGTGAGAGGACCTAGCGGGACAATCTTGTCTCCTGGTTACCCAGAATTTTATCCAAACTCTCTGAATTGTACATGGACAGTTGATGTCACCCATGGAAAAG
Seq A exon
GTGTGCAGTTCAACTTCCACACTTTTCATTTAGAAGACCATCATGACTATTTGCTGATCACAGAGAACGGTAGTTTTACCCAACCACTGGCACGACTCACTGGTTCGGAACTTCCCTCGACAATCAATGCTGGCCTTTATGGAAACTTCAGGGCTCAATTGCGCTTTATTTCTGACTTTTCAATATCATATGAAGGATTTAACATCACATTCTCTG
Seq C2 exon
AATATAACCTTGAGCCTTGTGAAGACCCTGGGATTCCTCAATATGGTAGCCGAGTTGGATTCAGCTTTGGAGTCGGTGATACTCTGACCTTCTCATGCTCATTGGGTTACCGACTGGAGGGTTCTTCTGAGATCATCTGTCTTGGCGGTGGCCGGCGAGTGTGGAGTGCACCTCTGCCAAGGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'33-24,'33-23,34-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.3=92.5)
A:
PF0043115=CUB=PD(64.8=95.9)
C2:
PF0008415=Sushi=WD(100=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGATGTGAGAGGACCTAG
R:
CCACACACCTTGGCAGAGG
Band lengths:
296-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: