GgaEX6022108 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139171914-139175007:-
Coord C1 exon
chr2:139174891-139175007
Coord A exon
chr2:139172701-139172916
Coord C2 exon
chr2:139171914-139172102
Length
216 bp
Sequences
Splice sites
3' ss Seq
AATTCTGCTTTTTCTAATAGGTG
3' ss Score
9.39
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CCTTATGTGGTGGAGATGTTAGAGGACCTAGTGGGACAATTTTATCCCCTGGTTATCCAGAACTTTATCCAAATTCACTGAATTGTACATGGACTGTGGATGTTACCCATGGTAAAG
Seq A exon
GTGTGCAGTTCACCTTTTACACCTTTCATCTGGAAGATCATCATGACTACTTACTAATAACAGAGAATGGCAGCTTCACACAGCCATTAGCACGTCTGACTGGCTCAGAGCTTCCTTCACCAATCAATGCTGGTCTCTATGGAAATTTCAGAGCCCAGTTGCGCTTTATATCAGATTTTTCAATATCATATGAAGGATTTAACATTTCTTTTTCTG
Seq C2 exon
AGTATAATCTTGAACCTTGTGAAGATCCAGGAATCCCACAGTTTGGTAACAGAGTAGGATTTAATTTTGGAGTGGGAGATACTCTGACGTACTCCTGTTCATCTGGATATCGTTTAGAAGGAACTTCAGAGATTATCTGTCTTGGTGGTGGCCGACGAGTATGGAGTGCACCTCTGCCAAGGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.3=92.5)
A:
PF0043115=CUB=PD(64.8=95.9)
C2:
PF0008415=Sushi=WD(100=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGATGTTAGAGGACCT
R:
CCACACACCTTGGCAGAGG
Band lengths:
299-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]