MmuEX6054085 @ mm9
Exon Skipping
Gene
ENSMUSG00000079022 | Col22a1
Description
collagen, type XXII, alpha 1 [Source:MGI Symbol;Acc:MGI:1916950]
Coordinates
chr15:71768429-71774869:-
Coord C1 exon
chr15:71774816-71774869
Coord A exon
chr15:71773512-71773556
Coord C2 exon
chr15:71768429-71768473
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTTCTTTCTTCCAGGGA
3' ss Score
12.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGGGAGCGAGGCCTGGATGGATTCCCTGGGAAGCCTGGAGAGACTGGAGAGCAG
Seq A exon
GGAAGACCTGGGCCTCCTGGTGTGGCAGGACTGCAGGGAGAGAAG
Seq C2 exon
GGAGATGTGGGGCCTGCAGGACCCCCTGGTGTGCCAGGCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079022-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.3=16.7),PF0139113=Collagen=FE(27.0=100)
A:
PF0139113=Collagen=FE(22.2=100)
C2:
PF0139113=Collagen=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCTGGATGGATTCCCT
R:
CACAGAGCCTGGCACACC
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: