MmuEX6054085 @ mm10
Exon Skipping
Gene
ENSMUSG00000079022 | Col22a1
Description
collagen, type XXII, alpha 1 [Source:MGI Symbol;Acc:MGI:1916950]
Coordinates
chr15:71937999-71944439:-
Coord C1 exon
chr15:71944386-71944439
Coord A exon
chr15:71943082-71943126
Coord C2 exon
chr15:71937999-71938043
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTTCTTTCTTCCAGGGA
3' ss Score
12.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGGGAGCGAGGCCTGGATGGATTCCCTGGGAAGCCTGGAGAGACTGGAGAGCAG
Seq A exon
GGAAGACCTGGGCCTCCTGGTGTGGCAGGACTGCAGGGAGAGAAG
Seq C2 exon
GGAGATGTGGGGCCTGCAGGACCCCCTGGTGTGCCAGGCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079022-'25-24,'25-23,26-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.3=16.7),PF0139113=Collagen=FE(27.0=100)
A:
PF0139113=Collagen=FE(22.2=100)
C2:
PF0139113=Collagen=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCTGGATGGATTCCCT
R:
CACAGAGCCTGGCACACC
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types