RnoEX0023020 @ rn6
Exon Skipping
Gene
ENSRNOG00000024824 | Col22a1
Description
collagen type XXII alpha 1 chain [Source:RGD Symbol;Acc:1309081]
Coordinates
chr7:113155530-113161123:-
Coord C1 exon
chr7:113161070-113161123
Coord A exon
chr7:113159774-113159818
Coord C2 exon
chr7:113155530-113155574
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTCACTTTCTTTCCTCCAGGGA
3' ss Score
11.26
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGGGAGCGAGGACTGGATGGATTCCCTGGGAAGCCTGGAGAGATTGGAGAGCAG
Seq A exon
GGAAGACCTGGACCTCCTGGTGTGGCAGGACTGCAGGGAGAGAAG
Seq C2 exon
GGAGATGTGGGGCCTGCCGGACCCCCTGGTGTGCCAGGCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024824-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGACTGGATGGATTCCCT
R:
ACAGAGCCTGGCACACCA
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]