HsaEX6082533 @ hg19
Exon Skipping
Gene
ENSG00000169436 | COL22A1
Description
collagen, type XXII, alpha 1 [Source:HGNC Symbol;Acc:22989]
Coordinates
chr8:139768028-139774709:-
Coord C1 exon
chr8:139774656-139774709
Coord A exon
chr8:139772486-139772530
Coord C2 exon
chr8:139768028-139768072
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTCTTTCCTCCAGGGC
3' ss Score
13.49
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAGAGCGAGGCCTGGATGGATTCCCTGGGAAGCCTGGGGACACAGGACAGCAG
Seq A exon
GGCAGGCCCGGCCCTTCTGGTGTGGCAGGACCCCAGGGAGAAAAG
Seq C2 exon
GGTGACGTGGGACCTGCGGGGCCACCTGGTGTACCAGGCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169436-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCTGGATGGATTCCCT
R:
CACTGAGCCTGGTACACCA
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)