BtaEX0009647 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015374 | COL22A1
Description
collagen, type XXII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22989]
Coordinates
chr14:5227938-5230275:+
Coord C1 exon
chr14:5227938-5227991
Coord A exon
chr14:5228600-5228644
Coord C2 exon
chr14:5230231-5230275
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACCCCGTGTTCTCTTTCCAGGGA
3' ss Score
12.29
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGGGAGCAAGGCCTGGATGGATTCCCCGGGAAGCAGGGGGAGACTGGTGAGCAG
Seq A exon
GGAAGACCCGGCCCTCCCGGTGAGCCAGGGCCCCGGGGGGAGAAG
Seq C2 exon
GGTGCCGTGGGTCCTGCAGGCCCCCCTGGGCTTCCAGGCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015374_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=FE(35.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGGCCTGGATGGATTC
R:
CACAGAGCCTGGAAGCCCA
Band lengths:
96-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development