MmuEX6059059 @ mm10
Exon Skipping
Gene
ENSMUSG00000071291 | Zfp58
Description
zinc finger protein 58 [Source:MGI Symbol;Acc:MGI:99205]
Coordinates
chr13:67490167-67494729:-
Coord C1 exon
chr13:67494603-67494729
Coord A exon
chr13:67494007-67494102
Coord C2 exon
chr13:67490167-67492150
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTCCTCCAAACAGGTC
3' ss Score
12.91
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAAATGCTGTCATTCTGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAGAGAATGCCTGGAGCCTGATCAGTGGGATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCATCTGGATTTCCTGG
Seq A exon
GTCTTGCTCTCTCTAAGCCATTCCTGGTGACATTTCTGGAGCAAAGACAAGGGCCTTGGGACGTGAAGAGACAAGCAGCAGCCGCTGTGCACCCAG
Seq C2 exon
GAAAAACCGTCAACAAATGTAAAGATTTCAGCAAGGCCTTTTTTTGCAAGTCACTGCTTACTCAGCACCAGAGAATTCGTACAGGGGAGAAAGCCTTCAAGTGTGAAGAATGTGGTAAGGCCTTTAATAATCGTTCAAACCTTTCTGAACACAAGAGAATACATACTGGAGAAAAACCCTACAAATGTGAAGAATGTGGTAAGGCCTTTCGTATTCGCTCAAAACTTTCTACACACCAGAGAGTTCATACGGGAGAAAAACCCTACAAATGTGAAGAATGTGGTAAGGCTTTTAATAGTCATTCAAACCTTTCTGAACACAAGAGAATCCATACTGGAGAAAAACCGTACAAATGTGAAGAATGTGGCAAGGCCTTCAGTACTCGCTCAACATATTATAGACACCAGAAAAACCATACTGGGAAAAAACCATACAAGTGTGAAGAATGCGCCAAAGAATTTTCCTACCCTTCATTGCTTAAGGTACATCAAAGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071291-'4-10,'4-9,5-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.037
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATGCCTGGAGCCTGAT
R:
AGGCTTTCTCCCCTGTACGAA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types