Special

MmuEX6064152 @ mm10

Exon Skipping

Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20428449-20440275:-
Coord C1 exon
chr9:20440192-20440275
Coord A exon
chr9:20439522-20439604
Coord C2 exon
chr9:20428449-20438660
Length
83 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGTTTCACTTTAGAAT
3' ss Score
9.03
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAGGTCAGATGTTTAAACCCAGCCTGATCTCTTGGTTGGAGAAGAAAGTAGAGTTGACAGTAATAGAGCAAGGAATTCTCCAAG
Seq A exon
AATGGGAAATGCACCTTAAGACAAAAAGGACAGCACTTCAGCAGGATAGATTTTGGTCAGATATGTCAAATGGGATGCAACTG
Seq C2 exon
GGAAGAGAGCACAGTGGAGGGGAACCTGGTGACCCTGTTCAAGTTGGAGCAGTTTTTAGTGAAGATTCATGCCCTCAAACTCACAGTAGTACTTCAAATACAGGGAACACTTTTGCGTGTAACTTAGATGGAAAAGACTTTCAGCCACTCCTTAAAGAAACTTCTACTGAAGAGAACATTGTCCAGTTGAACCAGTGTGTAAAACCTTTGATTTTCACTCCAGATGTTTCCCAGAAAAAGTGCACTCCGGAAAAATCTGTTGAATGCAGTGACTGTGGGGAAACTTTCGTTAATCAGCTAGAACTTCAGACACATAGTTCTTCTCATCGTGAAAAGAATATCCACAAATCAGAGGAGTGTGGACAAGCTTCTACTCATCCTATAAGCCATGGTGGGCATGTGATTCCCACTGAAAAAAAATACTATGAATGTAAGAAATGTGAAAAATTTTTTACACATCCTGTGTACCTTAATATCCATATGCAAAGCCACACTGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-'21-17,'21-15,22-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.119 C2=0.094
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NO

							
C2:
PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000124075





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr19:9469105-9469187 
ALTERNATIVE
HsaEX6092707
(ZNF560)
Human
(hg19)
chr19:9579781-9579863 
ALTERNATIVE
HsaEX6092707
(ZNF560)
Rat
(rn6)
chr8:21452293-21452375 
HIGH PSI
RnoEX6034715
(Zfp26)
Cow
(bosTau6)
chr7:15404882-15404964 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr4:40406410-40406457 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGCCTGATCTCTTGGTTGGAGA

				
R: 
CACGCAAAAGTGTTCCCTGTA

				
Band lengths: 
183-266

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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