MmuEX6066070 @ mm10
Exon Skipping
Gene
ENSMUSG00000035200 | Chrnb4
Description
cholinergic receptor, nicotinic, beta polypeptide 4 [Source:MGI Symbol;Acc:MGI:87892]
Coordinates
chr9:55034642-55036631:-
Coord C1 exon
chr9:55036587-55036631
Coord A exon
chr9:55036392-55036501
Coord C2 exon
chr9:55034642-55035632
Length
110 bp
Sequences
Splice sites
3' ss Seq
GGCCTTGCCTGTGTACTTAGGAA
3' ss Score
7.19
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AATGAGCGAGAACAGATCATGACCACCAGCATCTGGCTGAAACAG
Seq A exon
GAATGGACTGACTACCGCCTGGCCTGGAACAGCTCCTGCTATGAAGGGGTGAACATTCTGAGGATTCCTGCAAAGCGAGTCTGGTTGCCTGACATCGTGTTGTACAACAA
Seq C2 exon
TGCCGATGGGACCTATGAGGTGTCTGTCTACACCAACGTGATCGTGCGTTCCAACGGCAGCATCCAGTGGCTGCCCCCTGCCATCTACAAGAGTGCCTGCAAGATAGAGGTGAAGCACTTTCCCTTCGACCAGCAGAACTGCACCCTCAAATTTCGCTCCTGGACCTATGACCACACAGAGATTGACATGGTTCTTAAATCACCCACAGCCATCATGGATGACTTTACCCCCAGCGGTGAATGGGACATTGTGGCCCTCCCGGGTCGAAGGACAGTGAACCCACAGGACCCCAGCTATGTGGACGTGACCTATGACTTCATCATCAAGCGCAAGCCACTCTTCTACACCATCAATCTGATCATCCCTTGTGTGCTCATCACGTCGCTGGCTATCCTGGTCTTCTACCTGCCCTCCGACTGTGGGGAGAAGATGACGCTCTGCATCTCAGTGCTGCTGGCACTCACATTCTTCCTGCTGCTCATCTCCAAGATCGTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035200-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.5=100)
C2:
PF0293118=Neur_chan_LBD=PD(54.4=33.8),PF0293211=Neur_chan_memb=PU(86.5=63.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGATCATGACCACCAGCA
R:
GTCATCCATGATGGCTGTGGG
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types