RnoEX0021232 @ rn6
Exon Skipping
Gene
ENSRNOG00000014427 | Chrnb4
Description
cholinergic receptor nicotinic beta 4 subunit [Source:RGD Symbol;Acc:2351]
Coordinates
chr8:59615220-59617195:-
Coord C1 exon
chr8:59617151-59617195
Coord A exon
chr8:59616939-59617048
Coord C2 exon
chr8:59615220-59616210
Length
110 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGCCTGTGTACTTAGGAA
3' ss Score
7.9
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AATGAGCGAGAACAGATCATGACCACCAGCATCTGGCTGAAACAG
Seq A exon
GAATGGACTGACTACCGCCTGGCCTGGAACAGCTCCTGCTATGAAGGGGTGAACATTCTGAGGATCCCCGCAAAGCGTGTCTGGTTGCCTGACATCGTGTTGTACAACAA
Seq C2 exon
TGCCGATGGCACCTATGAGGTGTCTGTCTACACCAACGTGATTGTGCGTTCCAATGGCAGCATCCAGTGGCTGCCCCCTGCTATCTACAAGAGTGCCTGCAAGATTGAGGTGAAGCACTTTCCCTTCGACCAGCAGAACTGCACCCTCAAATTCCGCTCCTGGACCTATGACCACACGGAGATTGACATGGTTCTTAAGTCGCCCACGGCCATCATGGATGACTTCACCCCCAGTGGTGAATGGGACATTGTGGCCCTCCCAGGACGGAGGACGGTGAACCCTCAGGACCCCAGCTACGTGGACGTGACCTATGACTTCATCATCAAGCGCAAGCCGCTCTTCTACACCATCAATCTTATCATTCCTTGTGTGCTCATCACCTCGCTGGCTATCCTGGTCTTCTACCTGCCCTCCGACTGTGGGGAGAAGATGACGCTCTGCATCTCTGTGCTGCTGGCACTCACGTTCTTCCTGCTGCTCATCTCCAAGATCGTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014427-'5-10,'5-6,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.5=100)
C2:
PF0293118=Neur_chan_LBD=PD(54.4=33.8),PF0293211=Neur_chan_memb=PU(86.5=63.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAACAGATCATGACCACC
R:
CGTGGGCGACTTAAGAACCAT
Band lengths:
248-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]