MmuEX6068416 @ mm10
Exon Skipping
Gene
ENSMUSG00000091345 | Col6a5
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105864146-105878640:-
Coord C1 exon
chr9:105878550-105878640
Coord A exon
chr9:105875789-105875997
Coord C2 exon
chr9:105864146-105864835
Length
209 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTTTTCTTCATCTAGATT
3' ss Score
9.89
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCGGATTTAATCAATACCCACCACCCACGCTGAAGGACGACTGCAGACTTGTTGAGTTAGAGAGGGGAGACACACTGCCCCATGGCCTCAG
Seq A exon
ATTGACTGCTAAGCTGCGTGAGGTTCCTGAGAGCACAATCAGCCTGGCTGATCAAGAGCTGAACGCTGGGAAAGACTCATCTTTTGTGTTGGAGGATCACAGAGGCGACCATTTGGTTTACGTTCCAAGCCAGATGCTAGAGCCACATAAGTTAGTGAGCCACTATGGAAATGACCGGGAATCTGTAGCAATGGCGAGTCTCACTTCTG
Seq C2 exon
AACATGAAAGTCATGGCAGAGAAGAACTGGGTCTTGCTCATGAGCCTGGGGATGCTTCTCTTCAAGAATATTACATGGACGTGGCTTTCCTCATAGATGCTTCTCAACGAGTAGGAGGACGTAACGAGTTTAAGGAAGTGAGAACTTTGATAACGTCAGTACTGGATTACTTTCACATTGCCCCAGCTCCACTGACCTCTGTCTTAGGAGACAGAGTGGCTGTCCTGACCTACTCTCCCCCAGGCTATCTGCCAAACACTGAAGAGTGCCCAGTCTACCTGGAATTCGATTTGGTCACTTACAACACTGTACATCAAATGAAGCATCATCTCCAAGAGTCTCTTCAGCAGCTCAATGGTGATGTTTTTATTGGGCATGCCCTTCAGTGGACAGTTGACAATGTCTTTGTAGGAACCCCCAATCTGAGGAAAAACAAAGTTATCTTTATAGTAACTGCAGGTGAAACCAACCCTTTAGACAAAGAAGTTTTAAGGAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-'48-43,'48-42,50-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.239 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=WD(100=78.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGACTGCAGACTTGTTG
R:
AGTAGGTCAGGACAGCCACTC
Band lengths:
292-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types