RnoEX0023494 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114533343-114545485:-
Coord C1 exon
chr8:114545389-114545485
Coord A exon
chr8:114543739-114543947
Coord C2 exon
chr8:114533343-114534029
Length
209 bp
Sequences
Splice sites
3' ss Seq
CTTACCTTTTCTTCATCTAGATT
3' ss Score
9.61
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCGGATTTAATCAGTACCCGCCGCCACAGATGCTGGAGGACGACTGCAGGCTTGTTGATTCAGAGAGGGGGGACGTGCTGCACAGAAGAAGCCTCAG
Seq A exon
ATTGACGGCCAAGCTGCATGAGGTTTCTGCGAGCAAGAACAGTCCGGCTGGTCAAGAGCTGAAAGCCAGGAAAGACTTGTCTGTAGTGTTGGAGGATCACGGAGGTGACCATTTGGTTTACATTCCAACCCATATGGTAGAGCCACATAAGTTAGCGAGTCACTATGGAAATGACCAGGAGTCTGTTAGAATGGCAAGCCTCACTTCCG
Seq C2 exon
AACATGAAAATCATAGCAGAAGAGAACTGAGTCTTGCTCAAGAGCCTGGAGATGCTTCTCCTCAAGAATATTACATGGATGTGGCTTTCCTCATAGATGCTTCTCAACAAATAGGACATAATGCGTTTACAGAAGTGAGAGCTTTTATAACTTCAGTACTAGATTACTTTCACATCACCCCAGCTCCACTGACCTCTGTCTTAGGAGACAGAGTGGCTGTCCTGACCTATTCTCCTCCAGGCTATCTGCCAAACACGGAAGAATGCCCAGTCTACCTGGAATTCGATTTGGTCACTTACAACACTGTACACCAAATGAAGCGTCATCTCCAAGAGTCTCTTAAGCAACTCAATGGAGATGTTTTTCTTGGGCATGCCCTTCAGTGGACAATTGACAATGTCTTTGTAGGAACACCCAATCTGAGGAAAAACAAAGTTATCTTTATAGTAACTGCAGGGGAAACCAACCCGTTAGACAAAGAAGTTTTAAGGAATGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663-'44-41,'44-38,46-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.451 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=WD(100=80.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCACAGAAGAAGCCTCAG
R:
GACTGGGCATTCTTCCGTGTT
Band lengths:
293-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]