MmuEX6069862 @ mm10
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119958687-119961943:+
Coord C1 exon
chr9:119958687-119958825
Coord A exon
chr9:119958969-119959075
Coord C2 exon
chr9:119961755-119961943
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGACTGGCGTTTCCTTCTAGGGG
3' ss Score
9.26
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GCCATTAATTACTACGAGGCTGCCCAGAAGATCAGCGGGCAGGACTTCCTGTGCTGCGAGCTGGCCGAGCTCCTCCTCAAGCTGAAGAAATACCACAAGGCAGAGAAGGTGCTGAAGCAGGCCTTGGAGCGAGACTCAG
Seq A exon
GGGTCAAGGACATCCCATCCATGATAAATGAGGTCAAGTGCTTGCTTTTGTTGGCAAAGGTTTACAAGAGCCACAAGAAGGAAGAGGTGATGGAAACCCTGAATCTG
Seq C2 exon
GCCTTGGACCTCCAGTCCCGGATACTGAAGCGGGTTCCTTTGGAGCAATCAGAAATGATCCCCTTCCAGAATCAGCTGGCAGCCTCCATCTGCATCCAGATTGGGGAACATCACCTGGCGGAGAAAGATTACGACAGCGCCCTGAAATCCTATAAGGACGCCCTCGCCTACTCGCCCACAGACAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.8=61.7)
A:
PF134141=TPR_11=FE(49.3=100)
C2:
PF134141=TPR_11=PD(7.0=7.9),PF145591=TPR_19=PU(36.8=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTACGAGGCTGCCCAGAA
R:
GCCAGGTGATGTTCCCCAATC
Band lengths:
250-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types