RnoEX6038265 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128647296-128650756:+
Coord C1 exon
chr8:128647296-128647434
Coord A exon
chr8:128647530-128647636
Coord C2 exon
chr8:128650568-128650756
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGACTGGTGGCTCCTTCTAGGGG
3' ss Score
6.96
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCCATTAATTACTACGAGGCTGCCCAGAAGATCAGCGGGCAGGACTTCCTGTGCTGCGAGCTGGCCGAGCTGCTCCTGAAGCTGAAGAAATACCACAAGGCAGAGAAGGTGCTGAAGCAGGCCTTGGAGCGAGACTCCG
Seq A exon
GGGTCAAGGACATCCCGTCCCTGATGGATGAGGTCAAGTGCTTGCTTTTGTTGGCAAAAGTTTACAAGAGCCATAAGAAGGAAGACGTGATGGAAACGCTGAACCAG
Seq C2 exon
GCCTTGGACCTCCAGTCCCGCATACTGAAACGGGTTCCTCTGGAGCAGCCAGAAATGATCCCCTCCCAGAACCAGGTGGCAGCCTCCATCTGCGTCCAGATTGGAGAGCATCATCTCGCGGACAAAGATTACGACAGCGCTATGAAATCCTATAAGGACGCCCTGGCCTACTCACCTACAGACAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.8=61.7)
A:
PF134141=TPR_11=FE(49.3=100)
C2:
PF134141=TPR_11=PD(7.0=7.9),PF145591=TPR_19=PU(36.8=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTACGAGGCTGCCCAGAA
R:
TTTGTCCGCGAGATGATGCTC
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]