MmuEX6069864 @ mm10
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119958064-119958825:+
Coord C1 exon
chr9:119958064-119958136
Coord A exon
chr9:119958238-119958348
Coord C2 exon
chr9:119958687-119958825
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCCATACTTTCCCCACCAGCCT
3' ss Score
5.62
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGAGCTTTGTGAACATCTGCCCGGCCCCCACAGCAGCCTGCTACTGGGTGACGCTTTCATGAACATTCAGGAG
Seq A exon
CCTGAGAAGGCCCTGGAGGTGTATGACGAGGCCTATAGAAAGAACCCTCACGATGCCTCCTTGGTCAGCAGGATCGGACAGGCCTACGTGAAGACCCACCAGTACGCCAAG
Seq C2 exon
GCCATTAATTACTACGAGGCTGCCCAGAAGATCAGCGGGCAGGACTTCCTGTGCTGCGAGCTGGCCGAGCTCCTCCTCAAGCTGAAGAAATACCACAAGGCAGAGAAGGTGCTGAAGCAGGCCTTGGAGCGAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'20-32,'20-25,24-32=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(21.5=56.0)
A:
PF134141=TPR_11=FE(55.4=100)
C2:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.8=61.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTGTGAACATCTGCCCG
R:
CTGAGTCTCGCTCCAAGGCC
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types