GgaEX1060939 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19169863-19171943:+
Coord C1 exon
chr7:19169863-19169935
Coord A exon
chr7:19170903-19171013
Coord C2 exon
chr7:19171805-19171943
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTTCTCTGTTGAAGCCT
3' ss Score
8.13
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
AGACCTAGTAGAAAAACTGCCAAGTGCTCATACATTTCTTCTTCTTGGTGATGCATATATGAATATTCAAGAG
Seq A exon
CCTGATGAAGCCATAGAAGTCTACGAGCAGGCTTTGAAGAAAAATCCAAAAGATCCAGCTTTGGCAAGTAAAATTGGAAAAGCCTTAATCAAAACACATAACTATTCAAAG
Seq C2 exon
GCAATCAGTTACTATGAGGCTGCCTTGAAAAGTGGTCAGCAGAATTTTCTTTACTATGACTTGGCTGAACTTTTAATGAAACTAAAGCAGTATGAAAAGGCAGAAGTAGTACTTCAGCAAGCTTTAGATCATGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'20-22,'20-21,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(25.8=68.0)
A:
PF134141=TPR_11=FE(54.5=100)
C2:
PF134141=TPR_11=PD(15.2=21.3),PF134241=TPR_12=PU(44.9=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAGTAGAAAAACTGCCAAGTGC
R:
CATACTCATGATCTAAAGCTTGCTGA
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]