BtaEX6009385 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30476675-30478945:+
Coord C1 exon
chr2:30476675-30476747
Coord A exon
chr2:30477979-30478089
Coord C2 exon
chr2:30478807-30478945
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTGTATCTGCCAACATTAGCCT
3' ss Score
1.13
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGAAATGGCTGAAAGGATGCCCAGTCCTCGGTCTTTTCTTCTCCTTGGTGATGCATACATGAATATTCAGGAG
Seq A exon
CCTGAGGAAGCCATAGTAGCCTATGAGCAAGCACTAAATCACAACCCAAAGGATGGAACATTGGCAAGCAAAATTGGGAAAGCTCTTGTGAAAACTCATAACTACTCAAAG
Seq C2 exon
GCAATCACTTACTATGAGGCTGCTCTGAAAAGTGGACAACAAAATTATCTCTGCTATGACCTGGCTGAGCTCTTATTAAAATTGAAGTGGTATGATAAAGCAGAAAAAGTTCTTCAGCATGCTCTAGCTCATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-'18-24,'18-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(24.2=64.0)
A:
PF134141=TPR_11=FE(54.5=100)
C2:
PF134141=TPR_11=PD(16.7=23.4),PF134321=TPR_16=PU(39.4=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGGCTGAAAGGATGCCC
R:
AGGTTCATGAGCTAGAGCATGC
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]