DreEX6038627 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50132176-50134930:-
Coord C1 exon
chr9:50134858-50134930
Coord A exon
chr9:50132449-50132559
Coord C2 exon
chr9:50132176-50132314
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATATGTTCTCTGCTGACAGCCG
3' ss Score
6.21
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGAACTGGTGGACAAAATGCCGAATCCTCACAGCTTCCTCTTACTTGGTGATGCCTACATGAACATTCAGGAG
Seq A exon
CCGGAGTTGGCCATTGAAGTGTATGAACAAGCCCTGAAGAAAAACCCTAAAGATGGAGCTCTGGCCAGCAAGATTGGAAAAGCACTGGTCAAAACCCACAACTATGTAAAG
Seq C2 exon
GCTATCAATTATTATGAGGCAGCGTTGAAGAGCGGACAGCAGAATTTCTTGCGTTATGATCTGGCTGATCTGCTCATGAAGCTCAGACAGTACGAACGCTGTGAAAAAGTCCTGCAAGAGGCTCTCGCACATGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(25.0=68.0)
A:
PF134141=TPR_11=FE(52.9=100)
C2:
PF134141=TPR_11=PD(17.6=25.5),PF134241=TPR_12=PU(44.2=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTGGACAAAATGCCGAA
R:
TGCAGGACTTTTTCACAGCGT
Band lengths:
186-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]