RnoEX6017160 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52323821-52325363:-
Coord C1 exon
chr3:52325291-52325363
Coord A exon
chr3:52324686-52324796
Coord C2 exon
chr3:52323821-52323959
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTTGACAATGTTAGCCC
3' ss Score
2.45
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGAAATTGCTGAAAGGATGCCCAGCCCCCGGTCTTTCCTGCTCCTTGGTGATGCATACATGAACATTCAAGAG
Seq A exon
CCCGAGGAAGCCATAGTGGCCTATGAGCAAGCATTAAATCAGAACCCAAAAGATGGAACACTGGCGAGAAAAATTGGGAAAGCACTTGTCAAAACTCACAACTACTCAAAG
Seq C2 exon
GCAATCACCTATTATGAGGCTGCGCTGAAAAGTGGACAGCAGAATTGCCTGTGCTATGACCTGGCTGAGCTCCTCCTGAGACTAAAGTTGTATGAGAAAGCAGAGAAAGTTCTTCAGCATTCTCTAGCTCATGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-'37-36,'37-35,38-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(24.6=64.0)
A:
PF134141=TPR_11=FE(55.4=100)
C2:
PF134141=TPR_11=PD(15.4=21.3),PF134241=TPR_12=PU(44.2=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATTGCTGAAAGGATGCCCA
R:
GGATCATGAGCTAGAGAATGCTGA
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]