MmuEX6101732 @ mm10
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66222654-66224148:-
Coord C1 exon
chr2:66224076-66224148
Coord A exon
chr2:66223515-66223625
Coord C2 exon
chr2:66222654-66222792
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTTGACAATGTTAGCCA
3' ss Score
1.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGAAATTGCTGAGAGAATGCCCAGTCCCCGGTCTTTCCTGCTCCTCGGCGATGCGTACATGAACATTCAGGAG
Seq A exon
CCAGAAGAAGCCATAGTGGCCTATGAGCAAGCACTCAATCAGAACCCCAAAGATGGAACACTGGCAAGAAAAATTGGAAAAGCACTTGTCAAAACTCACAATTACTCAAAG
Seq C2 exon
GCAATCACCTATTATGAAGCGGCTCTGAAAAGTGGACAGCAGAATTGCCTTTGCTATGACCTGGCCGAGCTGCTACTGAGACTGAAGCTGTACGAGAAAGCAGAGAAAGTGCTCCAGCACTCTCTAGCTCATGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'29-26,'29-25,30-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(24.6=64.0)
A:
PF134141=TPR_11=FE(55.4=100)
C2:
PF134141=TPR_11=PD(15.4=21.3),PF134241=TPR_12=PU(45.5=74.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGAGAGAATGCCCAGTC
R:
TCATGAGCTAGAGAGTGCTGGA
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types