MmuEX6073775 @ mm9
Exon Skipping
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:121709694-121711009:+
Coord C1 exon
chr3:121709694-121709833
Coord A exon
chr3:121710462-121710650
Coord C2 exon
chr3:121710872-121711009
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTAATGTCATTTTCTGTAGTGT
3' ss Score
6.86
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GACCCAATTCCCTCGGAGCATTTAAGAAAACTTTGATGTCAAAGGCAGCTCTCACTCACAAGTTTCGCAAGTTGAGATCCCCGACAAAGTGCAGGGATTGTGACGGCATCGTAATGTTCCCAGGCGTCGAGTGTGAAGAG
Seq A exon
TGTCTCCTTGTTTGTCATCGGAAGTGTCTGGAGAATTTAGTCATTATTTGTGGTCATCAAAAACTTCAGGGAAAAATGCACATATTTGGAGCAGAATTCATACAAGTTGCAAAAAAGGAACCAGATGGCATCCCTTTTGTACTGAAAATATGTGCCTCAGAAATTGAAAATAGAGCCTTGTGTCTCCAG
Seq C2 exon
GGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTTTGGAAAATGGGATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAAATTATACCTGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(56.2=57.4)
A:
PF0013017=C1_1=PD(39.6=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
C2:
PF0062022=RhoGAP=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAATTCCCTCGGAGCATTT
R:
TCACAGATGTCATGTGAACTGA
Band lengths:
251-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: