BtaEX6016470 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49462056-49463063:+
Coord C1 exon
chr3:49462056-49462195
Coord A exon
chr3:49462476-49462664
Coord C2 exon
chr3:49462926-49463063
Length
189 bp
Sequences
Splice sites
3' ss Seq
AAACTGTCATTTTCTTGTAGTGT
3' ss Score
6.3
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GACCCAATTCTCTTGGAACATTTAAGAAAACGTTGATGTCAAAGGCAGCTCTCACTCACAAATTTCGCAAACTGAGATCCCCCACCAAGTGCAGGGATTGTGAAGGCATTGTGGTATTCCATGGTGTTGAATGTGAAGAG
Seq A exon
TGTCTCCTTGTTTGTCACCGAAAGTGTTTGGAAAATTTAGTCATCATTTGTGGTCATCAGAAACTTATGGGGAAAATCCACTTATTTGGAGCAGAGTTCACACAAGTTGCAAAAAAGGAACCAGATGGCATCCCTTTTGTACTCAAAATGTGTGCCTCAGAGATCGAAAATAGAGCCTTGAGTCTACAG
Seq C2 exon
GGAATTTATCGTGTATGTGGGAACAAAATCAAAACTGAAAAACTGTGTCAAGCCTTGGAAAATGGAATGCACTTGGTAGACATTTCAGAATTTAGCTCACATGATATCTGTGATGTCTTAAAATTATACCTTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190-'24-27,'24-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(56.2=57.4)
A:
PF0013017=C1_1=PD(39.6=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
C2:
PF0062022=RhoGAP=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACATTTAAGAAAACGTTGATGT
R:
AGACATCACAGATATCATGTGAGCT
Band lengths:
245-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]