GgaEX1008811 @ galGal3
Exon Skipping
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14337986-14338873:+
Coord C1 exon
chr8:14337986-14338125
Coord A exon
chr8:14338371-14338559
Coord C2 exon
chr8:14338736-14338873
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCCTCTCCTCTGTAGTGC
3' ss Score
9.24
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
CTGCAAATTCTCCGGGACCTTTTAGAAACACTAATATGTCTAAAGCAGCACAAACACATAAACTACGGAAGCTGAGAGCTCCATCTAAATGCAGAGAATGTGACAGCTTAGTGGTATTTCATGGAGCTGAATGTGAGGAG
Seq A exon
TGCTCACTTGCATGCCATAAGAAATGTTTAGAGACATTAGCTATTCAGTGTGGACACAAAAAACTTCATGGAAGGCTTCACTTGTTCGGAGTGGAATTTGCTCAAGCTGCTAAAAGTGTTCCTGATGGCATTCCTTTCATCATCAAGAAGTGTACATCAGAAATTGAAAGCAGAGCACTGAATGTCAAG
Seq C2 exon
GGTATCTATCGTGTGAATGGAGCCAAATCAAGAGTTGAAAAGCTTTGTCAAGCTTTTGAAAATGGAAAGGATTTGGTTGAGCTCTCAGAACTTTATGCACATGATATTAGCAATGTTCTCAAGCTGTATCTTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(57.1=59.6)
A:
PF0013017=C1_1=PD(38.8=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
C2:
PF0062022=RhoGAP=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAATTCTCCGGGACCTT
R:
ATGTGCATAAAGTTCTGAGAGCTCA
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]