RnoEX0011071 @ rn6
Exon Skipping
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225603549-225604832:+
Coord C1 exon
chr2:225603549-225603688
Coord A exon
chr2:225604291-225604479
Coord C2 exon
chr2:225604695-225604832
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTAAATGTCATTTCCTTTAGTGT
3' ss Score
8
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GACCCAATTCCCTCGGAACATTTAAGAAAACTTTGATGTCGAAGGCAGCTCTCACTCACAAGTTTCGCAAGTTGAGATCCCCCACAAAGTGCAGGGATTGTGAAGGCATCGTAATGTTCCCGGGCGTCGAGTGTGAAGAG
Seq A exon
TGTCTCCTTGTTTGTCACCGAAAGTGTTTGGAGAATTTAGTCATTGTTTGTGGTCATCAAAAACTTCAGGGGAAAATGCACATATTTGGAGCAGAATTCATACAAGTTGCAAAAAAGGAACCAGATGGCATCCCTTTCGTGCTAAAAATATGCGCCTCAGAAATTGAAAGTAGAGCCTTGTGTCTCCAG
Seq C2 exon
GGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTTTGGAAAATGGAATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAAATTATACCTGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563-'33-35,'33-33,34-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(56.2=57.4)
A:
PF0013017=C1_1=PD(39.6=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
C2:
PF0062022=RhoGAP=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAATTCCCTCGGAACAT
R:
TCACAGATGTCATGTGAACTGA
Band lengths:
253-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]