DreEX6095527 @ danRer10
Exon Skipping
Gene
ENSDARG00000026329 | arhgap29a
Description
Rho GTPase activating protein 29a [Source:ZFIN;Acc:ZDB-GENE-030131-9510]
Coordinates
chr24:28470602-28473448:+
Coord C1 exon
chr24:28470602-28470765
Coord A exon
chr24:28473020-28473208
Coord C2 exon
chr24:28473311-28473448
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCATTCTCATGTTTTTTTAGTGT
3' ss Score
9.54
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
GTCTGAGCGAAATGGTGACAGAGGCGGCCAGTTCTCCGGGACCTTTCCGCAACACACAGATGTCGAAAGCTGCACAGACGCACAAACTGAGGAAACTGAGGGCTCCATCAAAGTGCAGGGAGTGTGACAGTCTTGTGGTGTTTCATGGTGCTGAATGCGAGGAG
Seq A exon
TGTTCTCTGGCTTGCCATAAGAAGTGTTTGGAGACTCTGGCCATCCAGTGTGGTCATAAGAAGCTCCAGGGAAAACTACATTTATTTGCGATCGACTTTGCTCAGGCGGCGAAGAACAGTCCTGATGGAATCCCCTTCATTATCAAAAAATGCACCTCGGAGATCGAAAACAGGGCGCTTAACATCAAG
Seq C2 exon
GGAATTTACCGTGTTAATGGTGCCAAATCTCGGGTGGAGAAGCTTTGTCAGGCTTTTGAAAATGGCAAAGACTTGGTGGAGCTTTCGGATCTCTACCCTCACGATATCAGCAACGTCCTCAAACTCTACTTACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026329-'23-27,'23-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.564 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(57.1=50.9)
A:
PF0013017=C1_1=PD(38.8=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
C2:
PF0062022=RhoGAP=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTCCGCAACACACAGA
R:
GACGTTGCTGATATCGTGAGGG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]