MmuEX6073990 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127316261-127318489:+
Coord C1 exon
chr3:127316261-127316384
Coord A exon
chr3:127318045-127318221
Coord C2 exon
chr3:127318355-127318489
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTTAATTTTCTTAGGGC
3' ss Score
8.3
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTTTCAGTGTGAAAAGCTAATTCTTGTTGGAGACCCCAAACAGCTGCCTCCTACAATTCAGGGTTCTGATGCAGCTCATGAAAATGGACTGGAACAAACTCTCTTTGATCGGCTTTGCTTAATG
Seq A exon
GGCCACAAACCCGTTCTGTTAAGAACCCAGTACCGTTGTCATCCTGCGATCAGTGCCATAGCTAATGATCTGTTTTATGAAGGAAGCCTAGTGAATGGCATTTCCGAGAGAGAGAGAAGCCCTGTACTGGAGTGGCTGCCCACGCTGTGTTTCTATAACGTCACGGGAGCAGAGCAG
Seq C2 exon
GTTGAGAGAGAAAACAGCTTTGTGAATGTGGCAGAAGCCACGTTTACCCTCAAGCTAATCCAATCACTGATGGCAAGTGGGGTAGAGAGCTGCATGATTGGGGTGATAACATTATACAAGTCGCAGATGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'34-25,'34-24,35-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)
A:
PF130871=AAA_12=FE(31.0=100)
C2:
PF130871=AAA_12=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAATTCTTGTTGGAGACCCCA
R:
TGTACATCTGCGACTTGTATAATGT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: