BtaEX6030023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14223731-14225603:+
Coord C1 exon
chr6:14223731-14223854
Coord A exon
chr6:14225157-14225333
Coord C2 exon
chr6:14225469-14225603
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTGTACTTAAATTTCTTAGGGC
3' ss Score
6.78
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTTGAGTGTGAAAAGCTGATACTTGTTGGAGATCCCAAACAGCTTCCTCCTACTATTCAGGGTTCTGATGCAGCTCATGAAAATGGACTGGAACAAACTCTTTTTGACCGACTCTGCTTAATG
Seq A exon
GGCCACAAGCCAATTCTGTTGAGAACTCAGTACCGTTGTCACCCCACAATCAGCGCTATTGCTAATGATCTGTTTTATGAAGGAAATCTCATGAATGGCATTTCCGAAACAGAGAGGAGCCCTTTACTGGAATGGCTCCCAACTCTGTGTTTCTATAACGTAAAAGGACTGGAACAG
Seq C2 exon
ATTGAAAGAGGTAACAGCTTTCATAATGTGGCAGAAGCTGCTTTTACACTCAAGTTGATTCAATCACTGATTGCGAGTGGAATAGCGGGCTCCATGATTGGGGTGATAACATTATACAAATCCCAGATGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198-'15-19,'15-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)
A:
PF130871=AAA_12=FE(31.0=100)
C2:
PF130871=AAA_12=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAAAAGCTGATACTTGTTGGA
R:
GGGATTTGTATAATGTTATCACCCCA
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]