GgaEX0018152 @ galGal3
Exon Skipping
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58685670-58686670:+
Coord C1 exon
chr4:58685670-58685793
Coord A exon
chr4:58686220-58686396
Coord C2 exon
chr4:58686536-58686670
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTACATCATAATCCTTTAGGGA
3' ss Score
6.65
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTTTCAGTGTGAAAAGCTAGTCCTCGTTGGAGATCCTAAGCAACTGCCACCAACTATTCAAGGGTCTGAGAGCATTCATGAAAAAGGACTGGAGCAGACTCTCTTTGATCGGCTTTGCTTAATG
Seq A exon
GGACATAAAACAATACTGCTACGGACACAATACCGATGCCACCCCGCTATTAGTGCCATAGCCAACGAGCTGTTCTATGAAGGAAACCTGATAGATGGTGTTTCTGAGAAGGAAAGAAGTCCTTTACTGGATTGGCTTCCAACACTTTGTTTTTATAGTGTTAACGGGCTGGAGCAA
Seq C2 exon
ATTGAAAGAGACAACAGTTTTTACAACATGGCAGAAGTTCATTTTACAGTCAAGTTTATCCAGGCCCTGATTGCAAGTGGAATAGATGGATCTGCAGTGGGCGTGATTACTTTTTATAAGTCACAGATGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(9.5=52.4),PF130871=AAA_12=PU(5.9=26.2)
A:
PF130871=AAA_12=FE(31.0=100)
C2:
PF130871=AAA_12=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTGAAAAGCTAGTCCTCG
R:
ACTTATAAAAAGTAATCACGCCCACT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]